<86>May 22 05:17:11 userdel[4055898]: delete user 'rooter' <86>May 22 05:17:11 userdel[4055898]: removed group 'rooter' owned by 'rooter' <86>May 22 05:17:11 userdel[4055898]: removed shadow group 'rooter' owned by 'rooter' <86>May 22 05:17:11 groupadd[4055914]: group added to /etc/group: name=rooter, GID=696 <86>May 22 05:17:11 groupadd[4055914]: group added to /etc/gshadow: name=rooter <86>May 22 05:17:11 groupadd[4055914]: new group: name=rooter, GID=696 <86>May 22 05:17:11 useradd[4055925]: new user: name=rooter, UID=696, GID=696, home=/root, shell=/bin/bash <86>May 22 05:17:11 userdel[4055962]: delete user 'builder' <86>May 22 05:17:11 userdel[4055962]: removed group 'builder' owned by 'builder' <86>May 22 05:17:11 userdel[4055962]: removed shadow group 'builder' owned by 'builder' <86>May 22 05:17:11 groupadd[4055970]: group added to /etc/group: name=builder, GID=697 <86>May 22 05:17:11 groupadd[4055970]: group added to /etc/gshadow: name=builder <86>May 22 05:17:11 groupadd[4055970]: new group: name=builder, GID=697 <86>May 22 05:17:11 useradd[4055990]: new user: name=builder, UID=697, GID=697, home=/usr/src, shell=/bin/bash /usr/src/in/srpm/python3-module-scikits.sparse-0.4.4-alt1.src.rpm: The use of such a license name is ambiguous: GPL <13>May 22 05:17:13 rpmi: libgdbm-1.8.3-alt10 1454943313 installed <13>May 22 05:17:13 rpmi: libexpat-2.2.10-alt1 sisyphus+259966.100.1.1 1602824514 installed <13>May 22 05:17:13 rpmi: libp11-kit-0.23.15-alt2 sisyphus+252784.100.2.2 1591274915 installed <13>May 22 05:17:13 rpmi: libtasn1-4.16.0-alt1 sisyphus+245480.100.1.1 1580825069 installed <13>May 22 05:17:13 rpmi: rpm-macros-alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed <13>May 22 05:17:13 rpmi: alternatives-0.5.1-alt1 sisyphus+226946.100.1.1 1554830426 installed <13>May 22 05:17:13 rpmi: ca-certificates-2021.03.24-alt1 sisyphus+268304.300.1.1 1616591829 installed <13>May 22 05:17:13 rpmi: ca-trust-0.1.2-alt1 sisyphus+233348.100.1.1 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python3-module-Cython-0.29.23-alt1 sisyphus+269934.100.1.1 1618425365 installed Building target platforms: x86_64 Building for target x86_64 Wrote: /usr/src/in/nosrpm/python3-module-scikits.sparse-0.4.4-alt1.nosrc.rpm (w1.gzdio) <13>May 22 05:17:23 rpmi: python3-module-setuptools-1:56.1.0-alt1 sisyphus+271297.100.1.1 1620375285 installed Installing python3-module-scikits.sparse-0.4.4-alt1.src.rpm Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /usr/src/tmp/rpm-tmp.5593 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + rm -rf python3-module-scikits.sparse-0.4.4 + echo 'Source #0 (python3-module-scikits.sparse-0.4.4.tar):' Source #0 (python3-module-scikits.sparse-0.4.4.tar): + /bin/tar -xf /usr/src/RPM/SOURCES/python3-module-scikits.sparse-0.4.4.tar + cd python3-module-scikits.sparse-0.4.4 + /bin/chmod -c -Rf u+rwX,go-w . + echo 'Patch #0 (fix-compilation-crash.patch):' Patch #0 (fix-compilation-crash.patch): + /usr/bin/patch -p1 patching file sksparse/cholmod.pyx + sed -i 's|sphinx-build|sphinx-build-3|' doc/Makefile + sed -i -e 's/git_refnames\s*=\s*"[^"]*"/git_refnames = " \(tag: v0.4.4\)"/' sksparse/_version.py + find ./ -type f -name '*.py' -exec 2to3 -w -n '{}' + RefactoringTool: Skipping optional fixer: buffer RefactoringTool: Skipping optional fixer: idioms RefactoringTool: Skipping optional fixer: set_literal RefactoringTool: Skipping optional fixer: ws_comma RefactoringTool: Refactored ./versioneer.py RefactoringTool: Refactored ./sksparse/_version.py RefactoringTool: Refactored ./sksparse/test_cholmod.py --- ./versioneer.py (original) +++ ./versioneer.py (refactored) @@ -272,11 +272,11 @@ """ -from __future__ import print_function + try: import configparser except ImportError: - import ConfigParser as configparser + import configparser as configparser import errno import json import os --- ./sksparse/_version.py (original) +++ ./sksparse/_version.py (refactored) @@ -85,20 +85,20 @@ if e.errno == errno.ENOENT: continue if verbose: - print("unable to run %s" % dispcmd) + print(("unable to run %s" % dispcmd)) print(e) return None, None else: if verbose: - print("unable to find command, tried %s" % (commands,)) + print(("unable to find command, tried %s" % (commands,))) return None, None stdout = p.communicate()[0].strip() if sys.version_info[0] >= 3: stdout = stdout.decode() if p.returncode != 0: if verbose: - print("unable to run %s (error)" % dispcmd) - print("stdout was %s" % stdout) + print(("unable to run %s (error)" % dispcmd)) + print(("stdout was %s" % stdout)) return None, p.returncode return stdout, p.returncode @@ -123,8 +123,8 @@ root = os.path.dirname(root) # up a level if verbose: - print("Tried directories %s but none started with prefix %s" % - (str(rootdirs), parentdir_prefix)) + print(("Tried directories %s but none started with prefix %s" % + (str(rootdirs), parentdir_prefix))) raise NotThisMethod("rootdir doesn't start with parentdir_prefix") @@ -178,15 +178,15 @@ # "stabilization", as well as "HEAD" and "master". tags = set([r for r in refs if re.search(r'\d', r)]) if verbose: - print("discarding '%s', no digits" % ",".join(refs-tags)) + print(("discarding '%s', no digits" % ",".join(refs-tags))) if verbose: - print("likely tags: %s" % ",".join(sorted(tags))) + print(("likely tags: %s" % ",".join(sorted(tags)))) for ref in sorted(tags): # sorting will prefer e.g. "2.0" over "2.0rc1" if ref.startswith(tag_prefix): r = ref[len(tag_prefix):] if verbose: - print("picking %s" % r) + print(("picking %s" % r)) return {"version": r, "full-revisionid": keywords["full"].strip(), "dirty": False, "error": None @@ -215,7 +215,7 @@ hide_stderr=True) if rc != 0: if verbose: - print("Directory %s not under git control" % root) + print(("Directory %s not under git control" % root)) raise NotThisMethod("'git rev-parse --git-dir' returned error") # if there is a tag matching tag_prefix, this yields TAG-NUM-gHEX[-dirty] @@ -264,7 +264,7 @@ if not full_tag.startswith(tag_prefix): if verbose: fmt = "tag '%s' doesn't start with prefix '%s'" - print(fmt % (full_tag, tag_prefix)) + print((fmt % (full_tag, tag_prefix))) pieces["error"] = ("tag '%s' doesn't start with prefix '%s'" % (full_tag, tag_prefix)) return pieces --- ./sksparse/test_cholmod.py (original) +++ ./sksparse/test_cholmod.py (refactored) @@ -210,7 +210,7 @@ f3.cholesky_AAt_inplace(X.T) assert_allclose(f3(Xty), answer) - print(problem, mode) + print((problem, mode)) for f in (f1, f2, f3, f4): pXtX = XtX.todense()[f.P()[:, np.newaxis], f.P()[np.newaxis, :]] @@ -262,13 +262,13 @@ for mode in modes: print('----') print(dtype) - print(A_sp.indices.dtype) + print((A_sp.indices.dtype)) print(use_long) RefactoringTool: No changes to ./sksparse/__init__.py RefactoringTool: No changes to ./setup.py RefactoringTool: No changes to ./doc/conf.py RefactoringTool: Files that were modified: RefactoringTool: ./versioneer.py RefactoringTool: ./sksparse/_version.py RefactoringTool: ./sksparse/test_cholmod.py RefactoringTool: ./sksparse/__init__.py RefactoringTool: ./setup.py RefactoringTool: ./doc/conf.py print(ordering_method) print(mode) print('----') f = cholesky(A_sp, mode=mode, ordering_method=ordering_method) - print(f.D()) + print((f.D())) assert_allclose(f.det(), np.linalg.det(A_dense)) assert_allclose(f.logdet(), np.log(np.linalg.det(A_dense))) assert_allclose(f.slogdet(), [1, np.log(np.linalg.det(A_dense))]) + sed -i 's|np.get_include()|"./"|' setup.py + exit 0 Executing(%build): /bin/sh -e /usr/src/tmp/rpm-tmp.45726 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + cd python3-module-scikits.sparse-0.4.4 ++ /usr/bin/python3 -c 'import numpy; print(numpy.get_include()+"/numpy-py3")' + ln -s /usr/lib64/python3/site-packages/numpy/core/include/numpy-py3 numpy + CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export CFLAGS + CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export CXXFLAGS + FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export FFLAGS + /usr/bin/python3 setup.py build --debug running build running build_py creating build creating build/lib.linux-x86_64-3.9 creating build/lib.linux-x86_64-3.9/sksparse copying sksparse/_version.py -> build/lib.linux-x86_64-3.9/sksparse copying sksparse/test_cholmod.py -> build/lib.linux-x86_64-3.9/sksparse copying sksparse/__init__.py -> build/lib.linux-x86_64-3.9/sksparse creating build/lib.linux-x86_64-3.9/sksparse/test_data copying sksparse/test_data/well1850_rhs1.mtx.gz -> build/lib.linux-x86_64-3.9/sksparse/test_data copying sksparse/test_data/well1850.mtx.gz -> build/lib.linux-x86_64-3.9/sksparse/test_data copying sksparse/test_data/well1033_rhs1.mtx.gz -> build/lib.linux-x86_64-3.9/sksparse/test_data copying sksparse/test_data/well1033.mtx.gz -> build/lib.linux-x86_64-3.9/sksparse/test_data copying sksparse/test_data/illc1850_rhs1.mtx.gz -> build/lib.linux-x86_64-3.9/sksparse/test_data copying sksparse/test_data/illc1850.mtx.gz -> build/lib.linux-x86_64-3.9/sksparse/test_data copying sksparse/test_data/illc1033_rhs1.mtx.gz -> build/lib.linux-x86_64-3.9/sksparse/test_data copying sksparse/test_data/illc1033.mtx.gz -> build/lib.linux-x86_64-3.9/sksparse/test_data UPDATING build/lib.linux-x86_64-3.9/sksparse/_version.py set build/lib.linux-x86_64-3.9/sksparse/_version.py to '0.4.4' running build_ext cythoning sksparse/cholmod.pyx to sksparse/cholmod.c building 'sksparse.cholmod' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/sksparse x86_64-alt-linux-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O2 -Wall -pipe -frecord-gcc-switches -Wall -pipe -frecord-gcc-switches -Wall -pipe -frecord-gcc-switches -Wall -g -O2 -fPIC -g -I./ -I/usr/include -I/usr/include/suitesparse -I/usr/include/python3.9 -c sksparse/cholmod.c -o build/temp.linux-x86_64-3.9/sksparse/cholmod.o In file included from /usr/include/python3.9/numpy/ndarraytypes.h:1944, from /usr/include/python3.9/numpy/ndarrayobject.h:12, from /usr/include/python3.9/numpy/arrayobject.h:4, from sksparse/cholmod.c:612: /usr/include/python3.9/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ x86_64-alt-linux-gcc -pthread -shared -pipe -frecord-gcc-switches -Wall -g -O2 -g build/temp.linux-x86_64-3.9/sksparse/cholmod.o -L/usr/lib64 -lcholmod -o build/lib.linux-x86_64-3.9/sksparse/cholmod.cpython-39.so + exit 0 Executing(%install): /bin/sh -e /usr/src/tmp/rpm-tmp.83521 + umask 022 + /bin/mkdir -p /usr/src/RPM/BUILD + cd /usr/src/RPM/BUILD + /bin/chmod -Rf u+rwX -- /usr/src/tmp/python3-module-scikits.sparse-buildroot + : + /bin/rm -rf -- /usr/src/tmp/python3-module-scikits.sparse-buildroot + PATH=/usr/libexec/rpm-build:/usr/src/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/games + cd python3-module-scikits.sparse-0.4.4 + CFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export CFLAGS + CXXFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export CXXFLAGS + FFLAGS='-pipe -frecord-gcc-switches -Wall -g -O2' + export FFLAGS + /usr/bin/python3 setup.py install --skip-build --root=/usr/src/tmp/python3-module-scikits.sparse-buildroot --force running install running install_lib creating /usr/src/tmp/python3-module-scikits.sparse-buildroot creating /usr/src/tmp/python3-module-scikits.sparse-buildroot/usr creating /usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64 creating /usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64/python3 creating /usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64/python3/site-packages creating /usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64/python3/site-packages/sksparse copying build/lib.linux-x86_64-3.9/sksparse/cholmod.cpython-39.so -> /usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64/python3/site-packages/sksparse copying build/lib.linux-x86_64-3.9/sksparse/_version.py -> /usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64/python3/site-packages/sksparse creating /usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64/python3/site-packages/sksparse/test_data copying build/lib.linux-x86_64-3.9/sksparse/test_data/illc1033.mtx.gz -> /usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64/python3/site-packages/sksparse/test_data copying build/lib.linux-x86_64-3.9/sksparse/test_data/illc1033_rhs1.mtx.gz -> /usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64/python3/site-packages/sksparse/test_data copying build/lib.linux-x86_64-3.9/sksparse/test_data/illc1850.mtx.gz -> /usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64/python3/site-packages/sksparse/test_data copying build/lib.linux-x86_64-3.9/sksparse/test_data/illc1850_rhs1.mtx.gz -> /usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64/python3/site-packages/sksparse/test_data copying build/lib.linux-x86_64-3.9/sksparse/test_data/well1033.mtx.gz -> /usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64/python3/site-packages/sksparse/test_data copying build/lib.linux-x86_64-3.9/sksparse/test_data/well1033_rhs1.mtx.gz -> /usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64/python3/site-packages/sksparse/test_data copying build/lib.linux-x86_64-3.9/sksparse/test_data/well1850.mtx.gz -> /usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64/python3/site-packages/sksparse/test_data copying build/lib.linux-x86_64-3.9/sksparse/test_data/well1850_rhs1.mtx.gz -> /usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64/python3/site-packages/sksparse/test_data copying build/lib.linux-x86_64-3.9/sksparse/__init__.py -> /usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64/python3/site-packages/sksparse copying build/lib.linux-x86_64-3.9/sksparse/test_cholmod.py -> /usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64/python3/site-packages/sksparse byte-compiling /usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64/python3/site-packages/sksparse/_version.py to _version.cpython-39.pyc byte-compiling /usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64/python3/site-packages/sksparse/__init__.py to __init__.cpython-39.pyc byte-compiling /usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64/python3/site-packages/sksparse/test_cholmod.py to test_cholmod.cpython-39.pyc running install_egg_info running egg_info creating scikit_sparse.egg-info writing scikit_sparse.egg-info/PKG-INFO writing dependency_links to scikit_sparse.egg-info/dependency_links.txt writing requirements to scikit_sparse.egg-info/requires.txt writing top-level names to scikit_sparse.egg-info/top_level.txt writing manifest file 'scikit_sparse.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' (matched pattern 'LICEN[CS]E*') reading manifest file 'scikit_sparse.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'doc/_build' no previously-included directories found matching 'dist' warning: no previously-included files matching '*~' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution writing manifest file 'scikit_sparse.egg-info/SOURCES.txt' Copying scikit_sparse.egg-info to /usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64/python3/site-packages/scikit_sparse-0.4.4-py3.9.egg-info running install_scripts + export PYTHONPATH=/usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64/python3/site-packages + PYTHONPATH=/usr/src/tmp/python3-module-scikits.sparse-buildroot/usr/lib64/python3/site-packages + make -C doc pickle make: Entering directory '/usr/src/RPM/BUILD/python3-module-scikits.sparse-0.4.4/doc' sphinx-build-3 -b pickle -d _build/doctrees . _build/pickle Traceback (most recent call last): File "/usr/lib64/python3/site-packages/pkg_resources/__init__.py", line 568, in _build_master ws.require(__requires__) File "/usr/lib64/python3/site-packages/pkg_resources/__init__.py", line 886, in require needed = self.resolve(parse_requirements(requirements)) File "/usr/lib64/python3/site-packages/pkg_resources/__init__.py", line 777, in resolve raise VersionConflict(dist, req).with_context(dependent_req) pkg_resources.ContextualVersionConflict: (MarkupSafe 2.0.1 (/usr/lib64/python3/site-packages), Requirement.parse('MarkupSafe<2.0'), {'Sphinx'}) During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/bin/sphinx-build-3", line 33, in sys.exit(load_entry_point('Sphinx==4.0.1.dev20210517', 'console_scripts', 'sphinx-build')()) File "/usr/bin/sphinx-build-3", line 25, in importlib_load_entry_point return next(matches).load() File "/usr/lib64/python3.9/importlib/metadata.py", line 77, in load module = import_module(match.group('module')) File "/usr/lib64/python3.9/importlib/__init__.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1030, in _gcd_import File "", line 1007, in _find_and_load File "", line 986, in _find_and_load_unlocked File "", line 680, in _load_unlocked File "", line 855, in exec_module File "", line 228, in _call_with_frames_removed File "/usr/lib/python3/site-packages/sphinx/cmd/build.py", line 25, in from sphinx.application import Sphinx File "/usr/lib/python3/site-packages/sphinx/application.py", line 41, in from sphinx.registry import SphinxComponentRegistry File "/usr/lib/python3/site-packages/sphinx/registry.py", line 24, in from pkg_resources import iter_entry_points File "/usr/lib64/python3/site-packages/pkg_resources/__init__.py", line 3243, in def _initialize_master_working_set(): File "/usr/lib64/python3/site-packages/pkg_resources/__init__.py", line 3226, in _call_aside f(*args, **kwargs) File "/usr/lib64/python3/site-packages/pkg_resources/__init__.py", line 3255, in _initialize_master_working_set working_set = WorkingSet._build_master() File "/usr/lib64/python3/site-packages/pkg_resources/__init__.py", line 570, in _build_master return cls._build_from_requirements(__requires__) File "/usr/lib64/python3/site-packages/pkg_resources/__init__.py", line 583, in _build_from_requirements dists = ws.resolve(reqs, Environment()) File "/usr/lib64/python3/site-packages/pkg_resources/__init__.py", line 772, in resolve raise DistributionNotFound(req, requirers) pkg_resources.DistributionNotFound: The 'MarkupSafe<2.0' distribution was not found and is required by Sphinx make: *** [Makefile:43: pickle] Error 1 make: Leaving directory '/usr/src/RPM/BUILD/python3-module-scikits.sparse-0.4.4/doc' error: Bad exit status from /usr/src/tmp/rpm-tmp.83521 (%install) RPM build errors: Bad exit status from /usr/src/tmp/rpm-tmp.83521 (%install) Command exited with non-zero status 1 12.06user 0.51system 0:12.33elapsed 102%CPU (0avgtext+0avgdata 192200maxresident)k 0inputs+0outputs (0major+175999minor)pagefaults 0swaps hsh-rebuild: rebuild of `python3-module-scikits.sparse-0.4.4-alt1.src.rpm' failed. Command exited with non-zero status 1 22.98user 3.82system 0:26.62elapsed 100%CPU (0avgtext+0avgdata 192200maxresident)k 0inputs+0outputs (0major+618655minor)pagefaults 0swaps